SoyBase - A Soybean Genome Database
Entry ID: usda.AGIS.SoyBase

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Summary
Abstract: [adapted from &About SoyBase&]

Soybase is a soybean genome database, and is part of the legume
database project coordinated by Randy Shoemaker at Iowa State
University and funded by the USDA-ARS Plant Genome Program. Soybase
4.3.3 curently contains

Map_Collection 16 Classical genetic map and 15 molecular marker maps
Locus 2362 Morphological, biochemical and molecular markers
Probe 444 DNA markers with images of the screening autoradiograms
for most of the core set of markers developed at ISU
Gene 397 Data include gene class, alleles and 2 point data
QTL 362 Data on 33 agronomic traits including yield, seed quality
and disease resistance
Germplasm >30,000 Soybean germplasm with pointers to GRIN and PVP databases
and hypertext links to the enzyme, storage protein,
nodulin and allele classes
Reaction_or_Pathway 452 Clickable diagrams of metabolic pathways covering 524
enzymes and 640 metabolites
Enzyme 842 Data include EC number, purification, clones, physical
properties and the species and cultivars studied
Traits 565 Traits associated with entries in the GRIN and PVP databases
Pathology 19 Information on soybean diseases
Storage_Protein 17 Data on 6 vegetative and 11 seed storage proteins
Nodulin 91 Data on the nodulins of soybean
Nodulation: Plant and microbial genes and processes involved in nodule formation
Picture 363 Autoradiograms for RFLP probes and graphical genotypes
Author >19,000 Contains the names of all of the authors
Colleague >300 Names and address of soybean-associated people

Related URL
Link: GET DATA
Description: Access to plant genome databases from UK CropNet including SoyBase


Geographic Coverage
 N: 90.0 S: -90.0  E: 180.0  W: -180.0

Location Keywords
CONTINENT > AFRICA > CENTRAL AFRICA > CAMEROON
GEOGRAPHIC REGION > GLOBAL


Science Keywords
AGRICULTURE >AGRICULTURAL PLANT SCIENCE >PLANT BREEDING AND GENETICS >SOYBEAN    [Definition]
AGRICULTURE >AGRICULTURAL PLANT SCIENCE >PLANT DISEASES/DISORDERS/PESTS    [Definition]


ISO Topic Category
FARMING


Access Constraints
None


Use Constraints
Users of the database are solely responsible for compliance with
any copyright restrictions, including those applying to the author
abstracts. Documents from this server are provided "AS-IS" without any
warranty, expressed or implied.


Keywords
ACEDB
ALLELE
DNA
GENE MAPPING
GENOME
GENOTYPE
GERMPLASM
LEGUME
LOCUS
MAPPING
SEQUENCE
SOYBASE
SOYBEAN


Originating Center
USDA/ARS


Data Center
UK CropNet, Biotechnology and Biological Sciences Research Council, United Kingdom    [Information]
Data Center URL: http://ukcrop.net/

Data Center Personnel
Name: UK CROPNET
Email: ukcropnet at arabidopsis.info
Contact Address:
Polaris House
North Star Avenue
City: Swindona
Postal Code: SN2 1UH
Country: UK


Agronomy Department, College of Agriculture, Iowa State University    [Information]
Data Center URL: http://www.agron.iastate.edu/

Data Center Personnel
Name: DAVID GRANT
Phone: 515 294-1205
Email: dgrant at iastate.edu
Contact Address:
G304 Agronomy Hall, Iowa State University
City: Ames
Province or State: IA
Postal Code: 50011-1010
Country: USA


Personnel
DAVID GRANT
Role: TECHNICAL CONTACT
Phone: 515 294-1205
Email: dgrant at iastate.edu
Contact Address:
G304 Agronomy Hall, Iowa State University
City: Ames
Province or State: IA
Postal Code: 50011-1010
Country: USA


TYLER B. STEVENS
Role: DIF AUTHOR
Phone: (301) 614-6898
Fax: 301-614-5268
Email: Tyler.B.Stevens at nasa.gov
Contact Address:
NASA Goddard Space Flight Center
Global Change Master Directory
City: Greenbelt
Province or State: MD
Postal Code: 20771
Country: USA



Creation and Review Dates
Last DIF Revision Date: 2008-10-01

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