Locations>VERTICAL LOCATION>SEA SURFACE
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Biodiversity and ecophysiology of Antarctic sea-ice bacteria Entry ID: ASAC_1012 |
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Summary
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Abstract:
The data set includes imformation relevant for the study and description of sea-ice bacteria contains the following dataset subgroups and is organised by REFERENCE number. 1) Isolation data: strain designations (e.g. culture collection names are indicated for type cultures); media used for isolation and routine cultivation; temperature used for incubation; any special conditions (e.g. enrichment conditions) used for isolation; isolation site and type (e.g. sea-ice); availability of the indicated strain from the chief investigator (J. Bowman) 2) Phenotypic data: Includes morphological, physiological and biochemical tests performed. Details on how these were performed are indicated in the relevant reference. 3) Growth/temperature data: data for temperature related growth curves are given where available. Methods are indicated in the associated reference. 4) Fatty acid/chemotaxonomy data: fatty acid and other related data are given where available. Methods are indicated in the associated reference. 5) Genotypic data: data for DNA-guanosine/cytosine-content and genomic DNA:DNA hybridization are shown where available. Methods are indicated in the associated reference. 6) Phylogenetic data: data for sequences are cross-referenced to the GenBank database. In some cases, aligned sequence datasets are available in FASTA format and can be viewed in the programs BIOEDIT (www.mbio.ncsu.edu/BioEdit/bioedit.html) or CLUSTAL W (www.ebi.ac.uk/clustalw). 7) Other related published references which are useful or relevant to the dataset e.g. related sequences published subsequent to the ASAC study |
Related URL
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Link:
GET SERVICE
Description: Entrez Nucleotide Sequence Search - accession numbers required Link: VIEW PROJECT HOME PAGE Description: Public information for ASAC project 1012 Link: VIEW RELATED INFORMATION Description: BIOEDIT Program Link: VIEW RELATED INFORMATION Description: CLUSTAL W Program Link: VIEW RELATED INFORMATION Description: Citation reference for this metadata record and dataset |
Geographic Coverage
| N: -65.0 | S: -68.0 | E: 80.0 | W: 70.0 |
| Min Depth: 0 M |
Temporal Coverage
| Start Date: 1996-07-01 |
| Stop Date: 1999-06-30 |
Location Keywords
Science Keywords
| CRYOSPHERE >SEA ICE >PACK ICE [Definition] |
| CRYOSPHERE >SEA ICE >POLYNYAS [Definition] |
| CRYOSPHERE >SEA ICE [Definition] |
| OCEANS >SEA ICE >ICE TYPES [Definition] |
| OCEANS >SEA ICE >PACK ICE [Definition] |
| OCEANS >SEA ICE [Definition] |
| BIOLOGICAL CLASSIFICATION >BACTERIA/ARCHAEA >CYANOBACTERIA (BLUE-GREEN ALGAE) [Definition] |
| BIOSPHERE >AQUATIC ECOSYSTEMS >PLANKTON [Definition] |
| OCEANS >OCEAN CHEMISTRY >PIGMENTS >CHLOROPHYLL [Definition] |
| BIOSPHERE >AQUATIC ECOSYSTEMS >PELAGIC HABITAT [Definition] |
| BIOSPHERE >AQUATIC ECOSYSTEMS >LAKES [Definition] |
| BIOSPHERE >ECOLOGICAL DYNAMICS >ECOSYSTEM FUNCTIONS >BIOMASS DYNAMICS [Definition] |
| BIOSPHERE >ECOLOGICAL DYNAMICS >ECOSYSTEM FUNCTIONS >SECONDARY PRODUCTION [Definition] |
| BIOSPHERE >ECOLOGICAL DYNAMICS >COMMUNITY DYNAMICS >COMMUNITY STRUCTURE [Definition] |
ISO Topic Category
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BIOTA
OCEANS |
Instrument
| FLUORESCENCE MICROSCOPY [Information] |
| FSI >Filter Sampling Instrument |
| FLAME-IONIZATION DETECTOR [Information] |
| GAS CHROMATOGRAPHS [Information] |
| SPECTROPHOTOMETERS [Information] |
| TEMPERATURE PROFILERS [Information] |
| FLUOROMETERS [Information] |
| GC-MS >Gas Chromatograph/Mass Spectrometry [Information] |
Access Constraints
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The data are available from the databases indicated in the summary. PDF copies of some of the papers are available from the publications section of the Australian Antarctic Division (www.aad.gov.au). |
Use Constraints
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This data set conforms to the PICCCBY Attribution License (http://creativecommons.org/licenses/by/3.0/). |
Keywords
| 16S RIBOSOMAL RNA GENE |
| ANTARCTICA |
| CELLULOPHAGA |
| COLWELLIA |
| FLAVOBACTERIUM |
| GELIDIBACTER |
| GLACIECOLA |
| HALOPHILIC BACTERIA |
| PHYLOGENY |
| POLYUNSATURATED FATTY ACIDS |
| PSEUDOALTEROMONAS |
| PSYCHROBACTER |
| PSYCHROFLEXUS |
| PSYCHROPHILIC BACTERIA |
| PSYCHROSERPENS |
| SEA ICE |
| SHEWANELLA |
Data Set Progress
| COMPLETE |
Data Center
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Australian Antarctic Data Centre, Australia
[Information]
Data Center URL: http://data.aad.gov.au
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Personnel
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JOHN
BOWMAN Role: INVESTIGATOR Role: TECHNICAL CONTACT Role: DIF AUTHOR Phone: +61 3 6226 6380 Fax: +61 3 6226 2642 Email: john.bowman at utas.edu.au Contact Address: School of Agricultural Science University of Tasmania Private Bag 54 City: Hobart Province or State: Tasmania Postal Code: 7001 Country: Australia |
Publications/References
Bowman, J.P., Brown, M.V., Nichols, D.S. (1997), Biodiversity and ecophysiology of bacteria associated with Antarctic sea ice, Antarctic Science, 9, 2, 134-142
Bowman, J.P., McCammon, S.A., Brown, M.V., Nichols, D.S., McMeekin, T.A. (1997), Diversity and association of psychrophilic bacteria in Antarctic sea ice, Applied and Environmental Microbiology, 63, 8, 3068-3078
Bowman, J.P., McCammon, S.A., Brown, J.L., Nichols, P.D., McMeekin, T.A. (1997) Psychroserpens burtonensis gen. nov., sp. nov. , and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from Antarctic lacustrine and sea ice habitats International Journal Systematic Bacteriology. 47(3). 670-677
Bowman, J.P., McCammon, S.A., Nichols, D.S., Skerratt, J.H., Rea, S.M., Nichols, P.D., McMeekin, T.A. (1997) Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5w3) and grow anaerobically by dissimilatory Fe(III) reduction. International Journal Systematic Bacteriology 47(4). 1040-1047
Bowman, J.P., Nichols, D.S., McMeekin, T.A. (1997), Psychrobacter glacincola sp. nov., a halotolerent, psychrophilic bacterium isolated from Antarctic sea ice, Systematic and Applied Microbiology, 20, 209-215
Bowman, J.P., McCammon, S.A., Lewis, T.L, Skerratt, J.H., Brown, J.L., Nichols, D.S., McMeekin, T.A. (1998) Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144. 1601-1609;
Bowman, J.P., McCammon, S.A., Brown, J.L., McMeekin, T.A. (1998) Glaciecola punicea gen. nov., sp. nov. and Glaciecola pallidula gen. nov., sp. nov.: psychrophilic bacteria from Antarctic sea-ice habitats. International Journal of Systematic Bacteriology 48. 1213-1222
Bowman, J.P. (1998), Pseudoalteromonas prydzensis sp. nov., a psychrotrophic, halotolerant bacterium from Antarctic sea ice, International Journal of Systematic Bacteriology, 48, 1037-1041
Bowman, J.P., Gosink, J.J., McCammon, S.A., Lewis, T.L., Nichols, D.S., Nichols, P.D., Skerratt, J.H., Staley, J.T., McMeekin, T.A. (1998), Colwellia demingiae sp. nov., Colwellia hornerae sp. nov., Colwellia rossensis sp. nov. and Colwellia psychrotropica sp. nov.: psychrophilic Antarctic species with the ability to synthesize docosahexaenoic acid (22:6w3), International Journal of Systematic Bacteriology, 48, 1171-1180
Bowman, J.P. (2000), Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov., International Journal of Systematic and Evolutionary Microbiology, 50, 1861-1868
Bowman, J.P., Rea, S.M., Brown, M.V., McCammon, S.A., Smith, M.C., McMeekin, T.A. (2000), Community structure and psychrophily in Antarctic ecosystems
Bell, C.R., Brylinsky, M., Johnson-Green, P. (2000), Microbial Biosystems: New Frontiers, The 8th International Symposium on Microbial Ecology,, 287-291, Halifax, Canada
Brown, M.V., Bowman, J.P. (2001), A molecular phylogenetic survey of sea-ice microbial communities, (SIMCO) FEMS Microbiology Ecology, 35, 267-275
McCammon, S.A., Bowman, J.P. (2000) The taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov. and Flavobacterium xanthum nom. rev., sp. nov. and reclassification of [ Flavobacterium ] salegens as Salegentibacter. International Journal of Systematic and Microbial Evolution 50. 1055-1063
Nichols, D.S., Nichols, P.D., Russell, N.J., Davies, N.W., McMeekin, T.A. (1997), Polyunsaturated fatty acids in the psychrophilic bacterium Shewanella gelidimarina ACAM 456T: molecular species analysis of major phospholipids and biosynthesis of eicosapentaenoic acid., Biochimica et Biophysica Acta, 1347, 164-176
Smith, M.C., Bowman, J.P., Scott, F.J., Line, M.A. (2000), Sublithic bacteria associated with Antarctic quartz stones, Antarctic Science, 12, 2, 177-184
Bowman, J.P., McCammon, S.A., Brown, M.V., Nichols, D.S., McMeekin, T.A. (1997), Diversity and association of psychrophilic bacteria in Antarctic sea ice, Applied and Environmental Microbiology, 63, 8, 3068-3078
Bowman, J.P., McCammon, S.A., Brown, J.L., Nichols, P.D., McMeekin, T.A. (1997) Psychroserpens burtonensis gen. nov., sp. nov. , and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from Antarctic lacustrine and sea ice habitats International Journal Systematic Bacteriology. 47(3). 670-677
Bowman, J.P., McCammon, S.A., Nichols, D.S., Skerratt, J.H., Rea, S.M., Nichols, P.D., McMeekin, T.A. (1997) Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5w3) and grow anaerobically by dissimilatory Fe(III) reduction. International Journal Systematic Bacteriology 47(4). 1040-1047
Bowman, J.P., Nichols, D.S., McMeekin, T.A. (1997), Psychrobacter glacincola sp. nov., a halotolerent, psychrophilic bacterium isolated from Antarctic sea ice, Systematic and Applied Microbiology, 20, 209-215
Bowman, J.P., McCammon, S.A., Lewis, T.L, Skerratt, J.H., Brown, J.L., Nichols, D.S., McMeekin, T.A. (1998) Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144. 1601-1609;
Bowman, J.P., McCammon, S.A., Brown, J.L., McMeekin, T.A. (1998) Glaciecola punicea gen. nov., sp. nov. and Glaciecola pallidula gen. nov., sp. nov.: psychrophilic bacteria from Antarctic sea-ice habitats. International Journal of Systematic Bacteriology 48. 1213-1222
Bowman, J.P. (1998), Pseudoalteromonas prydzensis sp. nov., a psychrotrophic, halotolerant bacterium from Antarctic sea ice, International Journal of Systematic Bacteriology, 48, 1037-1041
Bowman, J.P., Gosink, J.J., McCammon, S.A., Lewis, T.L., Nichols, D.S., Nichols, P.D., Skerratt, J.H., Staley, J.T., McMeekin, T.A. (1998), Colwellia demingiae sp. nov., Colwellia hornerae sp. nov., Colwellia rossensis sp. nov. and Colwellia psychrotropica sp. nov.: psychrophilic Antarctic species with the ability to synthesize docosahexaenoic acid (22:6w3), International Journal of Systematic Bacteriology, 48, 1171-1180
Bowman, J.P. (2000), Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov., International Journal of Systematic and Evolutionary Microbiology, 50, 1861-1868
Bowman, J.P., Rea, S.M., Brown, M.V., McCammon, S.A., Smith, M.C., McMeekin, T.A. (2000), Community structure and psychrophily in Antarctic ecosystems
Bell, C.R., Brylinsky, M., Johnson-Green, P. (2000), Microbial Biosystems: New Frontiers, The 8th International Symposium on Microbial Ecology,, 287-291, Halifax, Canada
Brown, M.V., Bowman, J.P. (2001), A molecular phylogenetic survey of sea-ice microbial communities, (SIMCO) FEMS Microbiology Ecology, 35, 267-275
McCammon, S.A., Bowman, J.P. (2000) The taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov. and Flavobacterium xanthum nom. rev., sp. nov. and reclassification of [ Flavobacterium ] salegens as Salegentibacter. International Journal of Systematic and Microbial Evolution 50. 1055-1063
Nichols, D.S., Nichols, P.D., Russell, N.J., Davies, N.W., McMeekin, T.A. (1997), Polyunsaturated fatty acids in the psychrophilic bacterium Shewanella gelidimarina ACAM 456T: molecular species analysis of major phospholipids and biosynthesis of eicosapentaenoic acid., Biochimica et Biophysica Acta, 1347, 164-176
Smith, M.C., Bowman, J.P., Scott, F.J., Line, M.A. (2000), Sublithic bacteria associated with Antarctic quartz stones, Antarctic Science, 12, 2, 177-184
Creation and Review Dates
Last DIF Revision Date:
2009-01-13
Future DIF Review Date:
2003-07-03
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