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Infectious Hematopoietic Necrosis Virus (HNV) Database
Entry ID:
HNV_777
Summary
Abstract:
Infectious hematopoietic necrosis virus (IHNV) is a pathogen infecting
primarily salmonid hosts and is endemic to the Pacific Northwest. Numerous IHNV isolations and IHN outbreaks have occurred since the early 1900's. We have characterized the midG sequence, a 303 nucleotide region in the middle of the glycoprotein (G) gene, of over 900 IHNV isolates through its endemic range. Genetic sequencing ...  Purpose: Each virus isolates biological profile data is divided into five fields: general information, host information, geographic information, sequence results, and biological results. The user can search for selected isolates with the same criteria (i.e. sockeye with the identical midG sequence type) and then also sort the selected isolates with other parameters (i.e. year of isolation and geographic region, etc.) It is our intent that database become a repository for data on future IHNV isolates with their corresponding profiles that can be utilized by other researchers, fish managers, and diagnosticians to facilitate decisions regarding fish management (e.g. stock transfers, stock isolation, disease quarantines, etc.).
Related URL
Geographic Coverage
(Click for Interactive Map)
Spatial coordinates
Temporal Coverage
Start Date:
1970-01-01
Stop Date:
2000-01-01
Location Keywords
Science Keywords
ISO Topic Category
Quality
One of the strengths of the database will be the search parameters
offered. A user can search for a matching IHNV nucleotide sequence and request spatial outputs simultaneously. We employed a technician to review the database records by exporting all the fields into an Excel spreadsheet and comparing the exported data for ...
Access Constraints
The data will be available to other researchers when the database is made
available online. Some of the geographical locations (i.e. Where the virus was isolated) for political sensitive regions may be "fuzzy" for the web-enabled database.
Use Constraints
Although these data have been processed successfully on a computer system at
the Northwest Alliance for Computational Science and Engineering, no warranty expressed or implied is made regarding the accuracy or utility of the data on any other system or for general or scientific purposes, nor shall the act of distribution constitute any such warranty. ... Ancillary Keywords
Data Set Progress
COMPLETE
Data Center
Personnel
Role:
DIF AUTHOR
Phone:
(301) 614-6898
Fax:
301-614-5268
Email:
Tyler.B.Stevens at nasa.gov
Contact Address:
NASA Goddard Space Flight Center
Global Change Master Directory
City:
Greenbelt
Province or State:
MD
Postal Code:
20771
Country:
USA
Publications/References
Originator: Emmenegger, E.J., Meyers, T.R., Burton, T.O., and Kurath, G.
Publication Date: 2000 Title: Genetic Diversity and Epidemiology of Infectious Hematopoietic Necrosis Virus in Alaska Series Name: Dis. Aquat. Org. Issue Identification: 40:163-176
Creation and Review Dates
DIF Creation Date:
2007-03-12
Last DIF Revision Date:
2007-08-16
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- Webmaster: Monica Holland
- Responsible NASA Official: Lola Olsen
- Last updated: May 2013
