Science Keywords>OCEANS>MARINE SEDIMENTS
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Alkane mono-oxygenase genes from marine sediment near Casey
Entry ID:
casey_alk_clones
Summary
Abstract:
This dataset consists of 67 DNA sequences of the alkane mono-oxygenase gene. The sequence data are in FASTA format which can be opened with word-processing as well as sequence analysis software.
The clone library was created using the primers described by Kloos et al. (2006, Journal Microbiological Methods 66:486-496) F: AAYACNGCNCAYGARCTNGGNCAYAA and R:GCRTGRTGRTCNGARTGNCGYTG. The library was created from a marine sediment sample that was part of the SRE4 marine biodegradation experiment in O'Brien bay near Casey station. The sample used was from the sediment exposed to Special Antarctic Blend diesel 5-weeks after the time of deployment. These data were collected as part of AAS project 2672 - Pathways of alkane biodegradation in antarctic and subantarctic soils and sediments.
Related URL
Geographic Coverage
(Click for Interactive Map)
Spatial coordinates
Parent DIF
This data set description is a member of a collection. The
collection is described in
SRE4_Microbial Temporal Coverage
Start Date:
2001-12-01
Stop Date:
2001-12-25
Location Keywords
Science Keywords
ISO Topic Category
Platform
Quality
The temporal coverage information is approximate - samples were collected within the time frame given.
Access Constraints
These data are not yet publicly available as they have not yet been published or submitted to Genbank.
Use Constraints
This data set conforms to the PICCCBY Attribution License
(http://creativecommons.org/licenses/by/3.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=casey_al... when using these data. Ancillary Keywords
Data Set Progress
COMPLETE
Data Center
Distribution
Distribution Media:
HTTP
Distribution Size:
5 kb
Distribution Format:
fasta
Fees:
free
Personnel
Role:
INVESTIGATOR
Role:
TECHNICAL CONTACT
Role:
DIF AUTHOR
Phone:
+61 3 6226 6286
Fax:
+61 3 6226 2642
Email:
shanep at utas.edu.au
Contact Address:
Tasmanian Institute of Agricultural Research
University of Tasmania
Private Bag 54
City:
Hobart
Province or State:
Tasmania
Postal Code:
7001
Country:
Australia
Publications/References
Powell, S. M., J. P. Bowman, and I. Snape. (2004), Degradation of nonane by bacteria from Antarctic marine sediment., Polar Biology, 27, 573-578
Creation and Review Dates
DIF Creation Date:
2009-04-08
Last DIF Revision Date:
2012-04-12
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