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Laboratory Information Management System (LIMS)
Entry ID: USGS_LIMS
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Summary
Abstract: LIMS for Light Stable Isotopes is a Microsoft Access database program for managing samples, analyses, reports, and other data in a stable isotope (and tritium, carbon-14, and chlorofluorocarbon) laboratory.

The reliability and accuracy of isotopic data can be improved by utilizing database software to (i) store information about samples, (ii) store the results of mass spectrometric isotope-ratio analyses of samples, (iii) calculate analytical results using standardized algorithms stored in the database, (iv) normalize stable isotopic data to international scales using isotopic reference materials, and (v) generate multi-sheet paper templates for convenient sample loading of automated mass-spectrometer sample preparation manifolds. Major benefits of this system include (i) a dramatic improvement in quality assurance, (ii) an increase in laboratory efficiency, (iii) reduction in workload due to the elimination or reduction of the retyping of data by laboratory personnel, and (iv) a decrease in errors in data reported to sample submitters. Such a database provides a complete record of when and how often laboratory reference materials have been analyzed and it provides a record of what correction factors have been used through time. It provides an audit trail for laboratories.

LIMS for Light Stable Isotopes can store information about samples and analytical results for the following isotope ratios, isotopes, and chlorofluorocarbons:

2H/1H 11B/10B 18O/16O 37Cl/35Cl 129Xe/132Xe
3H 13C/12C 21Ne/20Ne 38Ar/36Ar 136Xe/132Xe
3He 14C 22Ne/20Ne 40Ar/36Ar CFC-11
4He 15N/14N 30Si/28Si 83Kr/84Kr CFC-12
7Li/6Li 17O/16O 34S/32S 86Kr/84Kr CFC-113

LIMS for Light Stable Isotopes has proven useful in laboratories that (i) receive samples for isotopic analysis from numerous individuals, and (ii) perform at least a few thousand isotopic analyses per year. Users who do not meet at least one, and likely both these criteria, will probably not find worthwhile the investment in time that it takes to learn and fully apply LIMS for Light Stable Isotopes.

Experience has shown that approximately one week is required to become reasonably acquainted with LIMS for Light Stable Isotopes and to set it up for operation in a laboratory. The user should plan one day for the tutorial in the manual and three to four days to set up a new database and begin importing isotopic analyses from mass spectrometers in the laboratory. Although this may seem like a large investment in time, the rewards in increased productivity and better organization in a laboratory far outweigh this setup cost.

Numerous improvements were made for continuous flow isotopic analysis in versions 7.13 (for Microsoft Access 97) and 8.13 (for Microsoft Access 2000). It is much easier to import isotopic results from Finnigan ISODAT worksheets, even worksheets on which corrections for amount of sample (linearity corrections) have been added. The capability to determine blank corrections using isotope mass balance from analyses of elemental analyzer samples has been added. It is now possible to calculate and apply drift corrections to isotopic data based on the time of day of analysis. Whereas Finnigan ISODAT software is confined to using only a single peak for calculating delta values, LIMS now enables one to use the mean of two or more reference injections during a continuous flow analysis to calculate delta values. This is useful with Finnigan's GasBench II online sample preparation system. Concentrations of carbon, nitrogen, and sulfur can be calculated based on one or more isotopic reference materials analyzed with a group of samples. Both sample data and isotopic analysis data can now be exported to Excel files. A calculator for determining the amount of sample needed for isotopic analysis based on a previous amount of sample and continuous flow area is now an integral part of LIMS for Light Stable Isotopes. LIMS for Light Stable Isotopes can now assign an error code to Finnigan elemental analyzer analyses in which one of the electrometers has saturated due to analysis of too much sample material, giving rise to incorrect isotopic abundances.

[Summary provided by the USGS.]

Related URL
Link: VIEW RELATED INFORMATION
Description: Summary of the Laboratory Information Management System (LIMS).
Service Citation
Originators: Coplen, T.B.
Title: Laboratory Information Management System (LIMS)
Release_Date: 2000
Provider: U.S. Geological Survey
URL: http://water.usgs.gov/software/LIMS/
ISO Topic Category
CLIMATOLOGY/METEOROLOGY/ATMOSPHERE
ENVIRONMENT
GEOSCIENTIFIC INFORMATION
OCEANS
Access Constraints
Please contact Tyler Coplen at tbcoplen@usgs.gov for the latest version of LIMS, which runs under Access 2000 and imports isotopic analyses from MassLynx and ISODAT NT 1.5 and 2.0.
Service Provider
Office of Surface Water, Water Resource Division, USGS, U.S. Department of the Interior

Service Provider Personnel
Name: WATER RESOURCES U.S. GEOLOGICAL SURVEY
Email: h2osoft at usgs.gov
Contact Address:
U.S.G.S.
Hydrologic Analysis Software Support Program
437 National Center
City: Reston
Province or State: VA
Postal Code: 20192
Country: USA
Personnel
TYLER B. COPLEN
Role: TECHNICAL CONTACT
Email: tbcoplen at usgs.gov
Contact Address:
U.S. Geological Survey
431 National Center
City: Reston
Province or State: VA
Postal Code: 20192
Country: USA

TYLER B. STEVENS
Role: SERF AUTHOR
Phone: (301) 614-6898
Fax: 301-614-5268
Email: Tyler.B.Stevens at nasa.gov
Contact Address:
NASA Goddard Space Flight Center
Global Change Master Directory
City: Greenbelt
Province or State: MD
Postal Code: 20771
Country: USA
Publications/References
Coplen, T.B., 2000, A guide for the laboratory information management system (LIMS) for light stable isotopes--Versions 7 and 8: U.S. Geological Survey Open-File Report 00-345, 121 p.
Creation and Review Dates
SERF Creation Date: 2008-05-20
SERF Last Revision Date: 2011-12-13
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