SoyBase - A Soybean Genome Database

Federal Geographic Data Committee (FGDC) Metadata:


Identification_Information:
Citation:
Citation_Information:
Originator: Unknown
Publication_Date: Unknown
Title: SoyBase - A Soybean Genome Database
Description:
Abstract:
[adapted from &About SoyBase&] Soybase is a soybean genome database, and is part of the legume database project coordinated by Randy Shoemaker at Iowa State University and funded by the USDA-ARS Plant Genome Program. Soybase 4.3.3 curently contains Map_Collection 16 Classical genetic map and 15 molecular marker maps Locus 2362 Morphological, biochemical and molecular markers Probe 444 DNA markers with images of the screening autoradiograms for most of the core set of markers developed at ISU Gene 397 Data include gene class, alleles and 2 point data QTL 362 Data on 33 agronomic traits including yield, seed quality and disease resistance Germplasm >30,000 Soybean germplasm with pointers to GRIN and PVP databases and hypertext links to the enzyme, storage protein, nodulin and allele classes Reaction_or_Pathway 452 Clickable diagrams of metabolic pathways covering 524 enzymes and 640 metabolites Enzyme 842 Data include EC number, purification, clones, physical properties and the species and cultivars studied Traits 565 Traits associated with entries in the GRIN and PVP databases Pathology 19 Information on soybean diseases Storage_Protein 17 Data on 6 vegetative and 11 seed storage proteins Nodulin 91 Data on the nodulins of soybean Nodulation: Plant and microbial genes and processes involved in nodule formation Picture 363 Autoradiograms for RFLP probes and graphical genotypes Author >19,000 Contains the names of all of the authors Colleague >300 Names and address of soybean-associated people
Purpose:
Not Available
Supplemental_Information:
Not Available
Status:
Progress: Complete
Maintenance_and_Update_Frequency: As needed
Spatial_Domain:
Description_of_Geographic_Extent:
Bounding_Coordinates:
West_Bounding_Coordinate: -180.0
East_Bounding_Coordinate: 180.0
North_Bounding_Coordinate: 90.0
South_Bounding_Coordinate: -90.0
Keywords:
Theme:
Theme_Keyword_Thesaurus: GCMD SCIENCE PARAMETERS
Theme_Keyword_Thesaurus: ANCILLARY KEYWORDS
Theme_Keyword_Thesaurus: ISO TOPIC CATEGORY
Theme_Keyword_Thesaurus: DATA SET LANGUAGE
Theme_Keyword: EARTH SCIENCE > AGRICULTURE > AGRICULTURAL PLANT SCIENCE > PLANT BREEDING AND GENETICS > SOYBEAN
Theme_Keyword: EARTH SCIENCE > AGRICULTURE > AGRICULTURAL PLANT SCIENCE > PLANT DISEASES/DISORDERS/PESTS
Theme_Keyword: Acedb
Theme_Keyword: Allele
Theme_Keyword: Dna
Theme_Keyword: Gene Mapping
Theme_Keyword: Genome
Theme_Keyword: Genotype
Theme_Keyword: Germplasm
Theme_Keyword: Legume
Theme_Keyword: Locus
Theme_Keyword: Mapping
Theme_Keyword: Sequence
Theme_Keyword: Soybase
Theme_Keyword: Soybean
Theme_Keyword: FARMING
Theme_Keyword: ENGLISH
Place:
Place_Keyword_Thesaurus: GCMD
Place_Keyword: CONTINENT > AFRICA > CENTRAL AFRICA > CAMEROON
Place_Keyword: GEOGRAPHIC REGION > GLOBAL
Access_Constraints: None
Use_Constraints:
Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.
Point_of_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: DAVID GRANT
Contact_Position: TECHNICAL CONTACT
Contact_Address:
Address_Type: Mailing and Physical Address
Address: G304 Agronomy Hall, Iowa State University
City: Ames
State_or_Province: IA
Postal_Code: 50011-1010
Country: USA
Contact_Voice_Telephone: 515 294-1205
Contact_Electronic_Mail_Address: dgrant@iastate.edu
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Data_Quality_Information:
Attribute_Accuracy:
Attribute_Accuracy_Report:
Not Available
Logical_Consistency_Report:
Not Available
Completeness_Report:
Not Available
Lineage:
Process_Step:
Process_Description:
Not Available
Process_Date: Unknown
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Spatial_Reference_Information:
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Distribution_Information:
Distributor:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: GB/BBSRC/UKCROPNET > UK CropNet, Biotechnology and Biological Sciences Research Council, United Kingdom
Contact_Person: UK CROPNET
Contact_Position: DATA CENTER CONTACT
Contact_Address:
Address_Type: Mailing and Physical Address
Address: Polaris House
Address: North Star Avenue
City: Swindona
Postal_Code: SN2 1UH
Country: UK
Contact_Electronic_Mail_Address: ukcropnet@arabidopsis.info
Distributor:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: IA-STATE/CA/AGRON > Agronomy Department, College of Agriculture, Iowa State University
Contact_Person: DAVID GRANT
Contact_Position: DATA CENTER CONTACT
Contact_Address:
Address_Type: Mailing and Physical Address
Address: G304 Agronomy Hall, Iowa State University
City: Ames
State_or_Province: IA
Postal_Code: 50011-1010
Country: USA
Contact_Voice_Telephone: 515 294-1205
Contact_Electronic_Mail_Address: dgrant@iastate.edu
Resource_Description: usda.AGIS.SoyBase
Distribution_Liability:
Not Available
Standard_Order_Process:
Digital_Form:
Digital_Transfer_Information:
Format_Name: Not Available
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name:
http://ukcrop.net/
Access_Instructions:
DATA CENTER URL
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name:
http://www.agron.iastate.edu/
Access_Instructions:
DATA CENTER URL
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name:
http://ukcrop.net/db.html
Access_Instructions:
Access to plant genome databases from UK CropNet including SoyBase
Fees: Not Available
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Metadata_Reference_Information:
Metadata_Date:
Metadata_Review_Date: 20081001
Metadata_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: TYLER B. STEVENS
Contact_Position: DIF AUTHOR
Contact_Address:
Address_Type: Mailing and Physical Address
Address: NASA Goddard Space Flight Center
Address: Global Change Master Directory
City: Greenbelt
State_or_Province: MD
Postal_Code: 20771
Country: USA
Contact_Voice_Telephone: (301) 614-6898
Contact_Facsimile_Telephone: 301-614-5268
Contact_Electronic_Mail_Address: Tyler.B.Stevens@nasa.gov
Metadata_Standard_Name: FGDC Content Standards for Digital Geospatial Metadata
Metadata_Standard_Version: FGDC-STD-001-1998
Metadata_Time_Convention: local time
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