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Biodiversity and ecophysiology of Antarctic sea-ice bacteria

Federal Geographic Data Committee (FGDC) Metadata:


Identification_Information:
Citation:
Citation_Information:
Originator: Bowman, J.
Publication_Date: 20021017
Title: Biodiversity and ecophysiology of Antarctic sea-ice bacteria
Edition:
Geospatial_Data_Presentation_Form:
Series_Information:
Series_Name: CAASM Metadata
Issue_Identification:
Publication_Information:
Publication_Place:
Publisher: Australian Antarctic Data Centre
Other_Citation_Details:
Online_Linkage: https://data.aad.gov.au/aadc/metadata/metadata_redirect.cfm?md=/AMD/AU/ASAC_1012
Description:
Abstract:
The data set includes information relevant for the study and description of sea-ice bacteria contains the following dataset subgroups and is organised by REFERENCE number. 1) Isolation data: strain designations (e.g. culture collection names are indicated for type cultures); media used for isolation and routine cultivation; temperature used for incubation; any special conditions (e.g. enrichment conditions) used for isolation; isolation site and type (e.g. sea-ice); availability of the indicated strain from the chief investigator (J. Bowman) 2) Phenotypic data: Includes morphological, physiological and biochemical tests performed. Details on how these were performed are indicated in the relevant reference. 3) Growth/temperature data: data for temperature related growth curves are given where available. Methods are indicated in the associated reference. 4) Fatty acid/chemotaxonomy data: fatty acid and other related data are given where available. Methods are indicated in the associated reference. 5) Genotypic data: data for DNA-guanosine/cytosine-content and genomic DNA:DNA hybridization are shown where available. Methods are indicated in the associated reference. 6) Phylogenetic data: data for sequences are cross-referenced to the GenBank database. In some cases, aligned sequence datasets are available in FASTA format and can be viewed in the programs BIOEDIT (www.mbio.ncsu.edu/BioEdit/bioedit.html) or CLUSTAL W (www.ebi.ac.uk/clustalw). 7) Other related published references which are useful or relevant to the dataset e.g. related sequences published subsequent to the ASAC study
Purpose:
Not Available
Supplemental_Information:
REFERENCE: Bowman, J.P., Brown, M.V., Nichols, D.S. 1997 Biodiversity and ecophysiology of bacteria associated with Antarctic sea ice Antarctic Science 9 2 134-142
Supplemental_Information:
REFERENCE: Bowman, J.P., McCammon, S.A., Brown, M.V., Nichols, D.S., McMeekin, T.A. 1997 Diversity and association of psychrophilic bacteria in Antarctic sea ice Applied and Environmental Microbiology 63 8 3068-3078
Supplemental_Information:
REFERENCE: Bowman, J.P., McCammon, S.A., Brown, J.L., Nichols, P.D., McMeekin, T.A. (1997) Psychroserpens burtonensis gen. nov., sp. nov. , and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from Antarctic lacustrine and sea ice habitats International Journal Systematic Bacteriology. 47(3). 670-677
Supplemental_Information:
REFERENCE: Bowman, J.P., McCammon, S.A., Nichols, D.S., Skerratt, J.H., Rea, S.M., Nichols, P.D., McMeekin, T.A. (1997) Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5w3) and grow anaerobically by dissimilatory Fe(III) reduction. International Journal Systematic Bacteriology 47(4). 1040-1047
Supplemental_Information:
REFERENCE: Bowman, J.P., Nichols, D.S., McMeekin, T.A. 1997 Psychrobacter glacincola sp. nov., a halotolerent, psychrophilic bacterium isolated from Antarctic sea ice Systematic and Applied Microbiology 20 209-215
Supplemental_Information:
REFERENCE: Bowman, J.P., McCammon, S.A., Lewis, T.L, Skerratt, J.H., Brown, J.L., Nichols, D.S., McMeekin, T.A. (1998) Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144. 1601-1609;
Supplemental_Information:
REFERENCE: Bowman, J.P., McCammon, S.A., Brown, J.L., McMeekin, T.A. (1998) Glaciecola punicea gen. nov., sp. nov. and Glaciecola pallidula gen. nov., sp. nov.: psychrophilic bacteria from Antarctic sea-ice habitats. International Journal of Systematic Bacteriology 48. 1213-1222
Supplemental_Information:
REFERENCE: Bowman, J.P. 1998 Pseudoalteromonas prydzensis sp. nov., a psychrotrophic, halotolerant bacterium from Antarctic sea ice International Journal of Systematic Bacteriology 48 1037-1041
Supplemental_Information:
REFERENCE: Bowman, J.P., Gosink, J.J., McCammon, S.A., Lewis, T.L., Nichols, D.S., Nichols, P.D., Skerratt, J.H., Staley, J.T., McMeekin, T.A. 1998 Colwellia demingiae sp. nov., Colwellia hornerae sp. nov., Colwellia rossensis sp. nov. and Colwellia psychrotropica sp. nov.: psychrophilic Antarctic species with the ability to synthesize docosahexaenoic acid (22:6w3) International Journal of Systematic Bacteriology 48 1171-1180
Supplemental_Information:
REFERENCE: Bowman, J.P. 2000 Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. International Journal of Systematic and Evolutionary Microbiology 50 1861-1868
Supplemental_Information:
REFERENCE: Bowman, J.P., Rea, S.M., Brown, M.V., McCammon, S.A., Smith, M.C., McMeekin, T.A. 2000 Community structure and psychrophily in Antarctic ecosystems
Supplemental_Information:
REFERENCE: Bell, C.R., Brylinsky, M., Johnson-Green, P. 2000 Microbial Biosystems: New Frontiers The 8th International Symposium on Microbial Ecology, Halifax, Canada 287-291
Supplemental_Information:
REFERENCE: Brown, M.V., Bowman, J.P. 2001 A molecular phylogenetic survey of sea-ice microbial communities (SIMCO) FEMS Microbiology Ecology 35 267-275
Supplemental_Information:
REFERENCE: McCammon, S.A., Bowman, J.P. (2000) The taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov. and Flavobacterium xanthum nom. rev., sp. nov. and reclassification of [ Flavobacterium ] salegens as Salegentibacter. International Journal of Systematic and Microbial Evolution 50. 1055-1063
Supplemental_Information:
REFERENCE: Nichols, D.S., Nichols, P.D., Russell, N.J., Davies, N.W., McMeekin, T.A. 1997 Polyunsaturated fatty acids in the psychrophilic bacterium Shewanella gelidimarina ACAM 456T: molecular species analysis of major phospholipids and biosynthesis of eicosapentaenoic acid. Biochimica et Biophysica Acta 1347 164-176
Supplemental_Information:
REFERENCE: Smith, M.C., Bowman, J.P., Scott, F.J., Line, M.A. 2000 Sublithic bacteria associated with Antarctic quartz stones Antarctic Science 12 2 177-184
Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 19960701
Ending_Date: 19990630
Currentness_Reference:Unknown
Status:
Progress: Complete
Maintenance_and_Update_Frequency: As needed
Spatial_Domain:
Description_of_Geographic_Extent:
Bounding_Coordinates:
West_Bounding_Coordinate: 70.0
East_Bounding_Coordinate: 80.0
North_Bounding_Coordinate: -65.0
South_Bounding_Coordinate: -68.0
Keywords:
Theme:
Theme_Keyword_Thesaurus: GCMD SCIENCE PARAMETERS
Theme_Keyword_Thesaurus: GCMD INSTRUMENT
Theme_Keyword_Thesaurus: ANCILLARY KEYWORDS
Theme_Keyword_Thesaurus: ISO TOPIC CATEGORY
Theme_Keyword_Thesaurus: DATA SET LANGUAGE
Theme_Keyword: EARTH SCIENCE > CRYOSPHERE > SEA ICE > PACK ICE
Theme_Keyword: EARTH SCIENCE > CRYOSPHERE > SEA ICE > POLYNYAS
Theme_Keyword: EARTH SCIENCE > CRYOSPHERE > SEA ICE
Theme_Keyword: EARTH SCIENCE > OCEANS > SEA ICE > ICE TYPES
Theme_Keyword: EARTH SCIENCE > OCEANS > SEA ICE > PACK ICE
Theme_Keyword: EARTH SCIENCE > OCEANS > SEA ICE
Theme_Keyword: EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > BACTERIA/ARCHAEA > CYANOBACTERIA (BLUE-GREEN ALGAE)
Theme_Keyword: EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > AQUATIC ECOSYSTEMS > PLANKTON
Theme_Keyword: EARTH SCIENCE > OCEANS > OCEAN CHEMISTRY > PIGMENTS > CHLOROPHYLL
Theme_Keyword: EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > PELAGIC
Theme_Keyword: EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > FRESHWATER ECOSYSTEMS > LAKE/POND
Theme_Keyword: EARTH SCIENCE > BIOSPHERE > ECOLOGICAL DYNAMICS > ECOSYSTEM FUNCTIONS > BIOMASS DYNAMICS
Theme_Keyword: EARTH SCIENCE > BIOSPHERE > ECOLOGICAL DYNAMICS > ECOSYSTEM FUNCTIONS > SECONDARY PRODUCTION
Theme_Keyword: EARTH SCIENCE > BIOSPHERE > ECOLOGICAL DYNAMICS > COMMUNITY DYNAMICS > COMMUNITY STRUCTURE
Theme_Keyword: FLUORESCENCE MICROSCOPY
Theme_Keyword: FSI > FILTER SAMPLING INSTRUMENT
Theme_Keyword: FLAME-IONIZATION DETECTOR
Theme_Keyword: GAS CHROMATOGRAPHS
Theme_Keyword: SPECTROPHOTOMETERS
Theme_Keyword: TEMPERATURE PROFILERS
Theme_Keyword: FLUOROMETERS
Theme_Keyword: GC-MS > GAS CHROMATOGRAPH/MASS SPECTROMETRY
Theme_Keyword: 16s Ribosomal Rna Gene
Theme_Keyword: Antarctica
Theme_Keyword: Cellulophaga
Theme_Keyword: Colwellia
Theme_Keyword: Flavobacterium
Theme_Keyword: Gelidibacter
Theme_Keyword: Glaciecola
Theme_Keyword: Halophilic Bacteria
Theme_Keyword: Phylogeny
Theme_Keyword: Polyunsaturated Fatty Acids
Theme_Keyword: Pseudoalteromonas
Theme_Keyword: Psychrobacter
Theme_Keyword: Psychroflexus
Theme_Keyword: Psychrophilic Bacteria
Theme_Keyword: Psychroserpens
Theme_Keyword: Sea Ice
Theme_Keyword: Shewanella
Theme_Keyword: BIOTA
Theme_Keyword: OCEANS
Theme_Keyword: ENGLISH
Place:
Place_Keyword_Thesaurus: GCMD
Place_Keyword: CONTINENT > ANTARCTICA
Place_Keyword: CONTINENT > ANTARCTICA > PRYDZ BAY
Place_Keyword: CONTINENT > ANTARCTICA > ELLIS FJORD
Place_Keyword: CONTINENT > ANTARCTICA > LONG FJORD
Place_Keyword: CONTINENT > ANTARCTICA > VESTFOLD HILLS
Place_Keyword: GEOGRAPHIC REGION > POLAR
Place_Keyword: VERTICAL LOCATION > SEA SURFACE
Access_Constraints: The data are available from the databases indicated in the summary.
Use_Constraints:
This data set conforms to the PICCCBY Attribution License (http://creativecommons.org/licenses/by/3.0/). Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=ASAC_1012 when using these data.
Point_of_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: JOHN BOWMAN
Contact_Position: INVESTIGATOR
Contact_Position: TECHNICAL CONTACT
Contact_Position: DIF AUTHOR
Contact_Address:
Address_Type: Mailing and Physical Address
Address: School of Agricultural Science
Address: University of Tasmania
Address: Private Bag 54
City: Hobart
State_or_Province: Tasmania
Postal_Code: 7001
Country: Australia
Contact_Voice_Telephone: +61 3 6226 6380
Contact_Facsimile_Telephone: +61 3 6226 2642
Contact_Electronic_Mail_Address: john.bowman@utas.edu.au
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Data_Quality_Information:
Attribute_Accuracy:
Attribute_Accuracy_Report:
Not Available
Logical_Consistency_Report:
Not Available
Completeness_Report:
Not Available
Lineage:
Process_Step:
Process_Description:
Not Available
Process_Date: Unknown
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Spatial_Reference_Information:
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Distribution_Information:
Distributor:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: AU/AADC > Australian Antarctic Data Centre, Australia
Contact_Person: DATA OFFICER AADC
Contact_Position: DATA CENTER CONTACT
Contact_Address:
Address_Type: Mailing and Physical Address
Address: Australian Antarctic Division
Address: 203 Channel Highway
City: Kingston
State_or_Province: Tasmania
Postal_Code: 7050
Country: Australia
Contact_Voice_Telephone: +61 3 6232 3244
Contact_Facsimile_Telephone: +61 3 6232 3351
Contact_Electronic_Mail_Address: metadata@aad.gov.au
Resource_Description: ASAC_1012
Distribution_Liability:
Not Available
Standard_Order_Process:
Digital_Form:
Digital_Transfer_Information:
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name:
http://data.aad.gov.au
Access_Instructions:
DATA CENTER URL
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name:
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=N...
Access_Instructions:
Entrez Nucleotide Sequence Search - accession numbers required
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name:
https://secure3.aad.gov.au/proms/public/projects/r...
Access_Instructions:
Public information for ASAC project 1012
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name:
http://www.mbio.ncsu.edu/BioEdit/bioedit.html
Access_Instructions:
BIOEDIT Program
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name:
http://www.ebi.ac.uk/clustalw
Access_Instructions:
CLUSTAL W Program
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name:
http://data.aad.gov.au/aadc/metadata/citation.cfm?...
Access_Instructions:
Citation reference for this metadata record and dataset
Fees: Free
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Metadata_Reference_Information:
Metadata_Date: 20021017
Metadata_Review_Date: 20160127
Metadata_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: JOHN BOWMAN
Contact_Position: INVESTIGATOR
Contact_Position: TECHNICAL CONTACT
Contact_Position: DIF AUTHOR
Contact_Address:
Address_Type: Mailing and Physical Address
Address: School of Agricultural Science
Address: University of Tasmania
Address: Private Bag 54
City: Hobart
State_or_Province: Tasmania
Postal_Code: 7001
Country: Australia
Contact_Voice_Telephone: +61 3 6226 6380
Contact_Facsimile_Telephone: +61 3 6226 2642
Contact_Electronic_Mail_Address: john.bowman@utas.edu.au
Metadata_Standard_Name: FGDC Content Standards for Digital Geospatial Metadata
Metadata_Standard_Version: FGDC-STD-001-1998
Metadata_Time_Convention: local time
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