Sampling of planktonic microorganisms for metagenomic, metaproteomic and metatranscriptomic analysesEntry ID: CEAMARC_CASO_200708_V3_PLANKTON_GENOMICS_PROTEOMICS
Abstract: Large volumes of water (200 - 500 L) were filtered and fractionated by size for various planktonic components: eukaryotic phytoplankton, prokaryotic picoplankton, and marine viruses. Sample sites were chosen to generate the widest diversity, and included planktonic blooms, oligotrophic zones, small polynyas near sea ice, nearshore areas, and Antarctic bottom water from coastal, canyon and deepwater areas. Half of each sample will be used for DNA library construction, and the other half will be used for meta-proteomic analysis. Random shotgun sequencing of the marine genomic libraries should produce a metagenomic snapshot of planktonic life in a variety of marine habitats.
This work was completed as part of ASAC project 2899 (ASAC_2899).
Data Set Citation
Dataset Originator/Creator: Cavicchioli, R., Hoffman, J. and McQuaid, J.
Dataset Title: Sampling of planktonic microorganisms for metagenomic, metaproteomic and metatranscriptomic analyses
Dataset Series Name: CAASM Metadata
Dataset Release Date: 2012-04-24
Dataset Publisher: Australian Antarctic Data CentreOnline Resource: https://data.aad.gov.au/aadc/metadata/metadata_redirect.cfm?md=/AMD...
Start Date: 2007-12-17Stop Date: 2008-01-28
Quality No known quality issues.
GOS stands for Global Ocean Sampling.
TFF- Tangential Flow Filtration.
Access Constraints These data are publicly available from the provided URL.
Use Constraints This data set conforms to the PICCCBY Attribution License
Please follow instructions listed in the citation reference provided at http://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=CEAMARC_... when using these data.
Data Set Progress
Distribution Media: HTTP
Phone: +61 2 9385 3516
Email: r.cavicchioli at unsw.edu.au
School Of Microbiology and Immunology University Of New South Wales
Province or State: NSW
Postal Code: 2052
Role: TECHNICAL CONTACT
Phone: 1+(240) 793-7231
Email: jhoffman at jcvi.org
9704 Medical Center Drive
Province or State: MD
Postal Code: 20850
Role: TECHNICAL CONTACT
Phone: 1+(619) 234 7889
Email: jmcquaid at jcvi.org
3082 A Street
City: San Diego
Province or State: CA
Postal Code: 92102
Extended Metadata Properties
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Creation and Review Dates
DIF Creation Date: 2008-02-24
Last DIF Revision Date: 2017-09-11